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Desserts » Cookies

Pumpkin Whoopie Pies

Jessica Scully

By Jessica Scully

Updated June 18, 2024

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This post may contain affiliate links. As an Amazon Associate I earn from qualifying purchases. Please read the disclosure policy.

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This paleo pumpkin whoopie pie recipe is the perfect easy gluten free and sugar free dessert! The outer cookies are soft and sweet with the dynamic flavor of pumpkin and spices while the filling is rich and creamy with a hint of cinnamon.

three paleo pumpkin whoopie pies stacked on top of each other on a white plate with pumpkins next to it

Pumpkin Whoopie Pie Recipe by Jessica of Paleo Scaleo

Everyone who has gone Paleo has inevitably, at one point or another, lamented the loss of dessert. Over at Paleo Scaleo, I believe wholeheartedly in scaling the Paleo lifestyle to fit your everyday life. It’s the only way it’s sustainable for the long term, or at least for my long term. And let’s be honest – my long term includes dessert.

While you’ve got these whoopie pies baking in the oven, pop on over to my site and check out some of my other recipes. In addition to some decadent Paleo desserts, you can find things like Buffalo Chicken Stuffed Sweet Potatoes and Fish Tacos with Jalapeno-Lime Slaw.

I also have a free resource library that includes Paleo shopping lists, clean eating tips, at home workouts, and more that you can access directly from the site, or you can gain access to it here.

One closeup side view of a paleo pumpkin whoopie pie with two orange brown cookies and white cream in the middle

Why I love this recipe:

  • This paleo pumpkin whoopie pie recipe comes together in around 30 minutes, so it looks impressive but is actually pretty easy to make!
  • My favorite part about the recipe is that you add all the cookie ingredients to one bowl and mix. Once the cookies are in the oven, you can rinse the bowl and make the filling.
  • The texture of these whoopie pies is so perfect. The cookies are very soft and cake like, which makes it easy to bite into them without all of the cream squeezing out of the middle.
  • This is the perfect recipe for holidays or for fall or winter. The pumpkin and spice really go well with a hot cup of cider or hot cocoa by the fire!
three paleo pumpkin whoopie pies lying flat on a white plate with pumpkins next to it

Pumpkin Whoopie Pie Recipe Tips:

  • This recipe works best with cashew butter that just consists of 100% cashews. Some grocery stores have cashew butter with added sunflower or safflower oil–avoid using these types of cashew butter because they will mess up the texture of the cookie.
  • It’s best to use full-fat canned coconut milk for the sugar free filling. Lite coconut milk or the one in the carton won’t work because those are too thin. If your canned coconut milk is chunky when you open it, mix it until it’s smooth in a blender or with a hand blender before adding it to the filling mix.
  • The eggs are needed for the cookies and can’t be substituted. Any major substitutions besides the ones listed on the ingredients list likely won’t work. But if you do experiment and find a good substitute for something please leave a comment and let us know how it works out!
  • There are two different options for the filling to choose from. The one that is palm shortening-based is best for those who are dairy-free and don’t want to use butter. The other one uses mainly butter and sugar-free confectioners sweetener which is the better option for a low carb or sugar free recipe.
  • Your cookie batter will be stickier and wetter than normal cookie batter. It’s ok – this is what will make them fluffy and “pie” like.
  • Be sure to use parchment paper or a silpat on the baking sheet. Since these cookies are so soft they will stick to the sheet without parchment. Be cautious when removing the cookies from the parchment to avoid any breaking.
  • Shape the cookie batter as the diameter that you want it on the cookie sheet. It will rise a bit, but it wont widen or become a perfect circle if it’s not shaped that way before baking. You want to make sure the cookies are shaped evenly so the cookies fit together well with the cream in the middle.
  • The cookies will rise in the oven and be puffy when they come out. Allow them to cool completely before removing from the cookie sheet.
  • You can store any leftovers at room temperature for a day or two, or store them in the fridge for up to a week. If stored in the fridge, just be sure to bring to room temp before eating – otherwise your cream filling will be solid.
  • I was able to make 16 good-sized cookies from the batter (which makes 8 whoopie pies). The amount of cookies may vary depending on your brand of ingredients. Be sure to make an even amount of cookies– 12-16 cookies is best. You want to avoid making the cookies too large because they will require too much frosting in the middle.
two paleo pumpkin whoopie pies on a white plate with one pie on top with a bite out of it

How to Make these Paleo Pumpkin Whoopie Pies:

Pre-heat the oven to 350°. Combine all of the cookie ingredients into a mixing bowl.

A white bowl filled with all of the unmixed whoopie cookie ingredients on a white marble counter

Use a stand mixer, hand blender or electric mixer to combine the ingredients.

A white bowl filled with orange brown cookie bater on a marble counter

Place 12-16 heaps of the batter onto a baking sheet lines with parchment paper or a silpat (they can stick so this is important). Shape the cookies evenly in the size you want them so they match for the whoopie pies.

twelve heaps of uncooked cookie batter on a baking sheet lined with white parchment paper

Bake for about 15-18 minutes until cookies are puffy but still soft. Let cool completely before removing from the parchment.

A hand holding a brown orange cookie with the baking sheet full of baked cookies in the background

To make the sugar free filling, start by combining the butter and coconut milk in a bowl.

Yellow butter and coconut milk in a clear glass bowl on a marble counter

Use an electric beater to whip the butter and coconut milk together.

White cream filling in a clear bowl with an electric beater mixing it

Sift the confectioners sweetener so there are no lumps, then add it slowly in small bits to the bowl while whipping with the electric beater.

White cream filling with confectioners sweetener added on top in a clear bowl with an electric beater mixing it

Add in cinnamon and vanilla extract.

White cream filling in a clear plastic bowl with brown cinnamon added on top

Whip until fully blended.

White cream filling in a clear bowl with an electric beater mixing it

To assemble to cookies, put a heaping spoonful of the filling onto the underside of one cookie.

A hand holding one cookie with filling on top of it over a white plate

Then place another cookie on top of the filing like a sandwich.

A hand holding a paleo pumpkin whoopie pie

Eat and enjoy!

three paleo pumpkin whoopie pies stacked on top of each other on a white plate with pumpkins next to it

Pumpkin Whoopie Pies

Jessica Scully
This pumpkin whoopie pie recipe is a fun fall dessert! The outer cookies are soft and sweet with the dynamic flavor of pumpkin and spices, while the filling is rich and creamy with a hint of cinnamon. 
4.62 from 18 votes
Print Pin Share Rate
Prep Time 15 minutes mins
Cook Time 15 minutes mins
Total Time 30 minutes mins
Course Dessert
Cuisine American, Paleo, Sugar Free
Servings 8 Whoopie Pies
Calories 364 kcal

Ingredients
  

Cookies:

  • 1 cup cashew butter
  • 2 eggs
  • 1 cup pumpkin purée
  • ⅓ cup sugar free maple syrup (or regular maple syrup for paleo)
  • ⅓ cup coconut flour
  • ½ teaspoon baking soda
  • ¼ teaspoon sea salt
  • 1 teaspoon pumpkin pie spice

For the Low Carb Sugar Free Cream Filling:

  • 3/4 cup unsalted butter
  • 3 tbsp full fat canned coconut milk or heavy cream
  • 1 1/2 cups swerve confectioners sweetener (sifted) or monk fruit confectioners sweetener (sifted)
  • 1 1/2 tsp vanilla extract
  • 1 1/2 tsp cinnamon

For the Dairy-Free Cream Filling:

  • 1 cup sustainable palm shortening
  • ⅓ cup sugar free maple syrup (or regular maple syrup for paleo)
  • 1 ½ teaspoons vanilla extract
  • 1 teaspoon cinnamon

Instructions
 

  • Preheat oven to 350° and line a cookie sheet with parchment paper.
  • Combine all cookie ingredients in the bowl of a stand mixer or food processor and mix until fully combined. Dough will be wet/sticky.
  • Spoon the cookie dough onto the parchment covered cookie sheet in 16 equal portions.
  • Bake for 15-18 minutes, until the cookies are puffy but still soft.
  • Allow to cool completely before removing from the parchment paper.
  • While the cookies are baking, make your desired version of cream filling.

For the Dairy-Free Cream Filling:

  • Combine all of the filling ingredients in the bowl of a stand mixer with the whisk attachment or in a bowl with an electric beater. 
  • Beat on high until fully combined and the shortening has become fluffy and light.

For the Low Carb Sugar Free Cream Filling:

  • Add the butter and coconut milk to the bowl of a stand mixer with the whisk attachment or in a bowl with an electric beater.
  • Beat on low/medium until fully combined.
  • Make sure to sift the confectioners sweetener so there are no lumps. While mixing the butter mixture with the electric beater, add a small portion of the sweetener at a time while blending until it’s all mixed.
  • Add in the vanilla and cinnamon and blend again until it’s all incorporated. 

To assemble the pumpkin whoopie pies:

  • To serve, turn one cookie upside down, top with a heaping spoonful of the cream filling, and top with another cookie to make a sandwich.
  • Repeat with all cookies until you’re done. 

Video

Notes

  • This recipe works best with cashew butter that just consists of 100% cashews. Some grocery stores have cashew butter with added sunflower or safflower oil–avoid using these types of cashew butter because they will mess up the texture of the cookie. 
  • It’s best to use full-fat canned coconut milk for the sugar free filling. Lite coconut milk or the one in the carton won’t work because those are too thin. If your canned coconut milk is chunky when you open it, mix it until it’s smooth in a blender or with a hand blender before adding it to the filling mix. 
  • There are two different options for the filling to choose from. The one that is palm shortening-based is best for those who are dairy-free and don’t want to use butter. The other one uses mainly butter and sugar-free confectioners sweetener which is the better option for a low carb or sugar free recipe. 
  • Your cookie batter will be stickier and wetter than normal cookie batter. It’s ok – this is what will make them fluffy and “pie” like.
  • Be sure to use parchment paper or a silpat on the baking sheet. Since these cookies are so soft they will stick to the sheet without parchment. Be cautious when removing the cookies from the parchment to avoid any breaking.
  • I was able to make 16 good-sized cookies from the batter (which makes 8 whoopie pies). The amount of cookies may vary depending on your brand of ingredients. Be sure to make an even amount of cookies– 12-16 cookies is best. You want to avoid making the cookies too large because they will require too much frosting in the middle. 
  • Shape the cookie batter as the diameter that you want it on the cookie sheet. It will rise a bit, but it wont widen or become a perfect circle if it’s not shaped that way before baking. You want to make sure the cookies are shaped evenly so the cookies fit together well with the cream in the middle. 
  • The cookies will rise in the oven and be puffy when they come out. Allow them to cool completely before removing from the cookie sheet.
  • You can store any leftovers at room temperature for a day or two, or store them in the fridge for up to a week. If stored in the fridge, just be sure to bring to room temp before eating – otherwise your cream filling will be solid. 
  • Nutrition facts below are for 1 whoopie pie made with sugar free ingredients and the low carb sugar free filling. To get net carbs, subtract 25 grams of sugar alcohol per serving and 5 grams of fiber. One whoopie pie made with sugar free ingredients has 18 net carbs. 

Nutrition

Serving: 1 whoopie pieCalories: 364 kcalCarbohydrates: 48 gProtein: 8 gFat: 31 gFiber: 5 gSugar: 1 g
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three paleo pumpkin whoopie pies stacked on top of each other on a white plate with pumpkins next to it

Here are some additional pumpkin recipes you may like…

  • Healthy Banana Pumpkin Cookies (AIP, Paleo, Sugar Free)
  • Easy Spiced Pupmkin Smoothie 
  • Flourless Paleo Pumpkin Bread

This paleo pumpkin whoopie pie recipe was originally posted in October of 2016, but has been republished in October of 2018 to include improved recipe tips, photos and a video. Original recipe by Jessica Scully, photos and video by Hannah Healy.

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Jessica Scully

Jessica Scully is a blogger, fitness trainer, and wedding planner. She has an insatiable appetite for adventure and is always looking for her next challenge. Jessica focuses on inspiring others in everything she does - she works to inspire people to eat better, move better, and live happier and healthier marriages. After making the switch to Paleo and seeing the dramatic positive effects it had, she has never looked back. She left her full-time job to follow her passion for helping others on their health and wellness journeys. Today, Jessica inspires and trains others to be the best versions of themselves and realize their full potential. You can connect with Jessica at www.paleoscaleo.com.

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